Function reference • bioRad

Reading radar data Functions to read polar volume (pvol) data. Requires a locally running Docker daemon for NEXRAD data.
`download_pvolfiles()`	Download polar volume (`pvol`) files from the NEXRAD archive
`is.pvolfile()`	Check if a file is a polar volume (`pvol`)
`get_iris_raw_task()`	Check the `task` type of an IRIS RAW file
`get_odim_object_type()`	Check the `data` type of an ODIM HDF5 file
`nexrad_to_odim()`	Convert a NEXRAD polar volume file to an ODIM polar volume file
`read_pvolfile()`	Read a polar volume (`pvol`) from file
`write_pvolfile()`	Write a polar volume (`pvol`) object to ODIM HDF5 file
`summary(<pvol>)` `is.pvol()` `dim(<pvol>)`	Inspect a polar volume (`pvol`)
Inspecting radar scans Functions to inspect and plot a polar scan (scan) from a polar volume (pvol).
`get_elevation_angles()`	Get elevation angles of a polar volume (`pvol`), scan (`scan`) or parameter (`param`)
`get_scan()`	Get a scan (`scan`) from a polar volume (`pvol`)
`summary(<scan>)` `is.scan()` `dim(<scan>)`	Inspect a scan (`scan`)
`example_scan`	Scan (`scan`) example
`plot(<scan>)`	Plot a scan (`scan`) in polar coordinates
`get_param()`	Get a parameter (`param`) from a scan (`scan`)
`summary(<param>)` `is.param()`	Inspect a parameter (`param`)
Manipulating radar scans Functions to manipulate radar images (scan, param, ppi) and to identify precipitation.
`integrate_to_ppi()`	Calculate a plan position indicator (`ppi`) of vertically integrated density adjusted for range effects
`calculate_param()`	Calculate a new scan parameter
`apply_mistnet()`	Apply MistNet segmentation to a polar volume
`Math(<scan>)` `Math(<pvol>)` `Ops(<param>)` `Ops(<scan>)` `Ops(<pvol>)`	Mathematical and arithmetic operations on param's, scan's and pvol's
Plotting radar scans Functions to plot a polar volume (pvol), scan (scan) or parameter (param) on a grid or basemap as a plan position indicator (ppi).
`project_as_ppi()`	Project a scan (`scan`) or parameter (`param`) to a plan position indicator (`ppi`)
`integrate_to_ppi()`	Calculate a plan position indicator (`ppi`) of vertically integrated density adjusted for range effects
`scan_to_raster()`	convert a polar scan into a raster
`scan_to_spatial()`	convert a polar scan into a spatial object.
`summary(<ppi>)` `is.ppi()` `dim(<ppi>)`	Inspect a plan position indicator (`ppi`)
`plot(<ppi>)`	Plot a plan position indicator (`ppi`)
`map()`	Map a plan position indicator (`ppi`) on a map
`download_basemap()`	Download a basemap for `map(ppi)`
`composite_ppi()`	Create a composite of multiple plan position indicators (`ppi`)
`[`(<ppi>)	Subset a plan position indicator (`ppi`)
Creating vertical profiles of biological targets Functions to process weather radar data (pvol) into vertical profiles (vp) of biological targets. Requires a locally running Docker daemon.
`calculate_vp()`	Calculate a vertical profile (`vp`) from a polar volume (`pvol`) file
`nexrad_to_odim()`	Convert a NEXRAD polar volume file to an ODIM polar volume file
Reading vertical profile data Functions to download, read, inspect and plot vertical profile (vp) data.
`download_vpfiles()`	Download vertical profile (`vp`) files from the ENRAM data repository
`select_vpfiles()`	Select vertical profile (`vp`) files from computer
`is.vpfile()`	Check if a file is a vertical profile (`vp`)
`read_vpfiles()`	Read a vertical profile (`vp`) or a list of vertical profiles (`vp`) from files
`read_cajun()`	Read a vertical profile (`vp`) from UMASS Cajun text file
`summary(<vp>)` `is.vp()` `dim(<vp>)`	Inspect a vertical profile (`vp`)
`example_vp`	Vertical profile (`vp`) example
`plot(<vp>)`	Plot a vertical profile (`vp`)
`as.data.frame(<vp>)` `as.data.frame(<vpts>)`	Convert a vertical profile (`vp`) or time series of vertical profiles (`vpts`) to a data frame
`list_vpts_aloft()`	List aloft urls for time series of vertical profiles (`vpts`) of radar stations
Combining vertical profiles into time series Functions to combine vertical profiles (vp) into time series (vpts) and read, inspect and plot these.
`c(<vp>)`	Concatenate vertical profiles (`vp`) into a list of vertical profiles
`bind_into_vpts()`	Bind vertical profiles (`vp`) into time series (`vpts`)
`read_vpts()`	Read a time series of vertical profiles (`vpts`) from file
`filter_vpts()`	Filter a time series of vertical profiles ('vpts') by a start and end time. Use argument night = TRUE to select only time stamps between sunset and sunrise, or night = FALSE to select daytime (sunrise to sunset). Selection for night and day uses `check_night()`.
`summary(<vpts>)` `is.vpts()` `dim(<vpts>)`	Inspect a time series of vertical profiles (`vpts`)
`example_vpts`	Time series of vertical profiles (`vpts`) example
`plot(<vpts>)`	Plot a time series of vertical profiles (`vpts`)
`regularize_vpts()`	Regularize a time series of vertical profiles (`vpts`) on a regular time grid
`as.data.frame(<vp>)` `as.data.frame(<vpts>)`	Convert a vertical profile (`vp`) or time series of vertical profiles (`vpts`) to a data frame
`[`(<vpts>)	Subset a time series of vertical profiles (`vpts`)
`get_quantity()`	Get a quantity from a vertical profile (`vp`) or time series of vertical profiles (`vpts`)
Integrating vertical profiles Functions to calculate e.g. the migration traffic rate (MTR) by vertically integrating profiles (vp or vpts) into an integrated profile (vpi).
`integrate_profile()`	Vertically integrate profiles (`vp` or `vpts`) into an integrated profile (`vpi`)
`plot(<vpi>)`	Plot an integrated profile (`vpi`)
`summary(<vpi>)` `is.vpi()`	Inspect an integrated profile (`vpi`)
Accessing vertical profile metadata Functions to access metadata of vertical profiles (vp), time series (vpts) or integrated profiles (vpi).
`rcs()`	Get radar cross section
`rcs<-`()	Set radar cross section
`sd_vvp_threshold()`	Get threshold of the radial velocity standard deviation
`sd_vvp_threshold<-`()	Set threshold of the radial velocity standard deviation
`check_night()`	Check if it is night at a given time and place
`doy()` `noy()`	Look up day of year (doy) or night of year (noy)
`attribute_table()`	Extract a volume coverage pattern table with all attributes
Radar beam geometry Functions relating the radar beam shape to range, distance and height
`beam_height()`	Calculate radar beam height
`beam_width()`	Calculate radar beam width
`beam_range()`	Calculate radar beam range
`beam_distance()`	Calculate radar beam distance
`beam_profile()`	Calculate vertical radiation profile
`beam_profile_overlap()`	Calculate overlap between a vertical profile ('vp') and the vertical radiation profile emitted by the radar
Other functions Other useful functions.
`dbz_to_eta()`	Convert reflectivity factor (dBZ) to reflectivity (eta)
`eta_to_dbz()`	Convert reflectivity (eta) to reflectivity factor (dBZ)
`nyquist_velocity()`	Calculate Nyquist velocity for a given pulse repetition frequency (PRF)
`sunrise()` `sunset()`	Calculate sunrise or sunset for a time and place
`convert_legacy()`	Convert legacy bioRad objects

Reference

Reading radar data

Inspecting radar scans

Manipulating radar scans

Plotting radar scans

Creating vertical profiles of biological targets

Reading vertical profile data

Combining vertical profiles into time series

Integrating vertical profiles

Accessing vertical profile metadata

Radar beam geometry

Other functions